Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11865609 chr16:1691281 G/T 0 178 24.7 30.25 2.93 KM Plot
PCPG rs11865689 chr16:1764382 T/C 7.41E-5 172 25.6 15.85 17.77 KM Plot
PCPG rs11866502 chr16:1692378 G/A 0 177 25.47 27.33 2.65 KM Plot
PCPG rs11866796 chr16:85224451 T/G 0.000191 170 25.17 34.47 17.83 KM Plot
PCPG rs11884669 chr2:24329705 G/C 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs11886838 chr2:24318236 C/A 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs11887770 chr2:24301703 G/C 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs11890987 chr2:24296100 C/T 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs11902776 chr2:24297264 G/C 0.00011 178 25.4 26.57 17.43 KM Plot
PCPG rs11914096 chr22:50219351 G/A 0.000157 177 25.67 23.88 15.18 KM Plot
PCPG rs11915635 chr3:80547427 G/A 6.87E-5 176 19.87 24.03 27.2 KM Plot
PCPG rs11918372 chr3:80545136 A/G 8.52E-5 178 27.43 22.63 25.17 KM Plot
PCPG rs11921862 chr3:80558382 G/A 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs11921869 chr3:80558545 C/T 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs11928688 chr3:80558294 A/G 2.79E-5 177 19.53 24.77 27.2 KM Plot